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Table 3 Features of protein-pairs used to in computational model

From: Mycobacterium tuberculosis and Clostridium difficille interactomes: demonstration of rapid development of computational system for bacterial interactome prediction

Features used Attribute type
Gene Neighborhood score, obtained from STRING Real valued, ranges from 0-999
Gene Fusion score, obtained from STRING Real valued, ranges from 0-999
Gene Co-occurrence score, obtained from STRING Real valued, ranges from 0-999
Gene Co-expression score, obtained from STRING Real valued, ranges from 0-999
GO Cellular component based feature Real valued, ranges from 0-0.5
GO: Molecular function Real valued, ranges from 0-0.5
GO: Biological process Real valued, ranges from 0-0.5
  1. Each protein-pair is presented with seven features, four of which are obtained directly from STRING database, and three of which are computed based on GO annotations