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Table 3 Features of protein-pairs used to in computational model

From: Mycobacterium tuberculosis and Clostridium difficille interactomes: demonstration of rapid development of computational system for bacterial interactome prediction

Features used

Attribute type

Gene Neighborhood score, obtained from STRING

Real valued, ranges from 0-999

Gene Fusion score, obtained from STRING

Real valued, ranges from 0-999

Gene Co-occurrence score, obtained from STRING

Real valued, ranges from 0-999

Gene Co-expression score, obtained from STRING

Real valued, ranges from 0-999

GO Cellular component based feature

Real valued, ranges from 0-0.5

GO: Molecular function

Real valued, ranges from 0-0.5

GO: Biological process

Real valued, ranges from 0-0.5

  1. Each protein-pair is presented with seven features, four of which are obtained directly from STRING database, and three of which are computed based on GO annotations
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Microbial Informatics and Experimentation

ISSN: 2042-5783