TY - CHAP AU - Wackett, L. P. AU - Hershberger, C. D. PY - 2001 DA - 2001// BT - Biocatalysis and Biodegradation: Microbial Transformation of Organic Compounds PB - ASM Press CY - Washington, DC UR - https://doi.org/10.1128/9781555818036 DO - 10.1128/9781555818036 ID - Wackett2001 ER - TY - JOUR AU - van Deursen, R. AU - Reymond, J. -. L. PY - 2007 DA - 2007// TI - Chemical space travel JO - Chem Med Chem VL - 2 UR - https://doi.org/10.1002/cmdc.200700021 DO - 10.1002/cmdc.200700021 ID - van Deursen2007 ER - TY - JOUR AU - Whitman, W. B. AU - Coleman, D. C. AU - Wiebe, W. J. PY - 1998 DA - 1998// TI - Prokaryotes: the unseen majority JO - Proc Natl Acad Sci, USA VL - 95 UR - https://doi.org/10.1073/pnas.95.12.6578 DO - 10.1073/pnas.95.12.6578 ID - Whitman1998 ER - TY - JOUR AU - Isambert, H. AU - Stein, R. R. PY - 2009 DA - 2009// TI - One the need for widespread horizontal gene transfers under genome size constraint JO - Biol Direct VL - 4 UR - https://doi.org/10.1186/1745-6150-4-28 DO - 10.1186/1745-6150-4-28 ID - Isambert2009 ER - TY - JOUR AU - Garg, R. P. AU - Alemany, L. B. AU - Moran, S. AU - Parry, R. J. PY - 2009 DA - 2009// TI - Identification, characterization, and bioconversion of a new intermediate in valanimycin biosynthesis JO - J Am Chem Soc VL - 131 UR - https://doi.org/10.1021/ja901243p DO - 10.1021/ja901243p ID - Garg2009 ER - TY - JOUR AU - Gao, J. AU - Ellis, L. B. AU - Wackett, L. P. PY - 2011 DA - 2011// TI - The University of Minnesota Pathway Prediction System: multi-level prediction and visualization JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkr200 DO - 10.1093/nar/gkr200 ID - Gao2011 ER - TY - STD TI - The University of Minnesota Biocatalysis/Biodegradation Database. [http://umbbd.msi.umn.edu/] UR - http://umbbd.msi.umn.edu/ ID - ref7 ER - TY - STD TI - UM-BBD Aerobic Metabolic Pathway for Toluene. [http://umbbd.msi.umn.edu/tol/tol_map.html] UR - http://umbbd.msi.umn.edu/tol/tol_map.html ID - ref8 ER - TY - STD TI - UM-BBD Aerobic Metabolic Pathway for Isoniazid. [http://umbbd.msi.umn.edu/inh/inh_map.html] UR - http://umbbd.msi.umn.edu/inh/inh_map.html ID - ref9 ER - TY - JOUR AU - Kanehisa, M. AU - Goto, S. AU - Kawashima, S. AU - Nakaya, A. PY - 2002 DA - 2002// TI - The KEGG databases at GenomeNet JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.1.42 DO - 10.1093/nar/30.1.42 ID - Kanehisa2002 ER - TY - JOUR AU - Gasteiger, E. AU - Gattiker, A. AU - Hoogland, C. AU - Ivanyi, I. AU - Appel, R. D. AU - Bairoch, A. PY - 2003 DA - 2003// TI - ExPASy: The proteomics server for in-depth protein knowledge and analysis JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg563 DO - 10.1093/nar/gkg563 ID - Gasteiger2003 ER - TY - JOUR AU - Scheer, M. AU - Grote, A. AU - Chang, A. AU - Schomburg, I. AU - Munaretto, C. AU - Rother, M. AU - Söhngen, C. AU - Stelzer, M. AU - Thiele, J. AU - Schomburg, D. PY - 2011 DA - 2011// TI - BRENDA, the enzyme information system in 2011 JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1089 DO - 10.1093/nar/gkq1089 ID - Scheer2011 ER - TY - JOUR AU - Benson, D. A. AU - Karsch-Mizrachi, I. AU - Lipman, D. J. AU - Ostell, J. AU - Sayers, E. W. PY - 2011 DA - 2011// TI - GenBank JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1079 DO - 10.1093/nar/gkq1079 ID - Benson2011 ER - TY - JOUR AU - Gans, J. AU - Wolinsky, M. AU - Dunbar, J. PY - 2005 DA - 2005// TI - Computational improvements reveal great bacterial diversity and high metal toxicity in soil JO - Science VL - 309 UR - https://doi.org/10.1126/science.1112665 DO - 10.1126/science.1112665 ID - Gans2005 ER - TY - STD TI - UM-BBD Microorganism List. [http://umbbd.msi.umn.edu/servlets/pageservlet?ptype=allmicros] UR - http://umbbd.msi.umn.edu/servlets/pageservlet?ptype=allmicros ID - ref15 ER - TY - JOUR AU - Sutherland, J. B. AU - Selby, A. L. AU - Freeman, J. P. AU - Fu, P. P. AU - Miller, D. W. AU - Cerniglia, C. E. PY - 1992 DA - 1992// TI - Identification of xyloside conjugates formed from anthracene by Rhizoctonia solani JO - Myco Res VL - 96 UR - https://doi.org/10.1016/S0953-7562(09)81100-3 DO - 10.1016/S0953-7562(09)81100-3 ID - Sutherland1992 ER - TY - JOUR AU - Zablotowicz, R. M. AU - Hoagland, R. E. AU - Locke, M. A. AU - Hickey, W. J. PY - 1995 DA - 1995// TI - Glutathione-s-transferase activity and metabolism of glutathione conjugates by rhizosphere bacteria JO - Appl Environ Microbiol VL - 61 ID - Zablotowicz1995 ER - TY - JOUR AU - Stamper, D. M. AU - Tuovinen, O. H. PY - 1998 DA - 1998// TI - Biodegradation of the acetanilide herbicides alachlor, metolachlor, and propachlor JO - Crit Rev Microbiol VL - 24 UR - https://doi.org/10.1080/10408419891294163 DO - 10.1080/10408419891294163 ID - Stamper1998 ER - TY - JOUR AU - Postle, J. K. AU - Rheineck, B. D. AU - Allen, P. E. AU - Baldock, J. O. AU - Cook, C. J. AU - Zogbaum, R. AU - Vandenbrook, J. P. PY - 2004 DA - 2004// TI - Chloroacetanilide herbicide metabolites in Wisconsin groundwater: 2001 survey results JO - Environ Sci Technol VL - 38 UR - https://doi.org/10.1021/es040399h DO - 10.1021/es040399h ID - Postle2004 ER - TY - JOUR AU - Thurman, E. M. AU - Ferrer, I. AU - Parry, R. PY - 2002 DA - 2002// TI - Accurate mass analysis of ethanesulfonic acid degradates of acetochlor and alachlor using high-performance liquid chromatography and time-of-flight mass spectrometry JO - J Chromatogr A VL - 957 UR - https://doi.org/10.1016/S0021-9673(01)01470-4 DO - 10.1016/S0021-9673(01)01470-4 ID - Thurman2002 ER - TY - JOUR AU - Wackett, L. P. PY - 2007 DA - 2007// TI - Pathways to discovering new microbial metabolism for functional genomics and biotechnology JO - Adv Micro Physiol VL - 61 ID - Wackett2007 ER - TY - BOOK AU - Stanier, R. PY - 1986 DA - 1986// TI - The Microbial World PB - Prentice Hall CY - New York ID - Stanier1986 ER - TY - STD TI - UM-BBD Naphthalene 1,2-Dioxygenase Reactions. [http://umbbd.msi.umn.edu/naph/ndo.html] UR - http://umbbd.msi.umn.edu/naph/ndo.html ID - ref23 ER - TY - STD TI - UM-BBD Toluene 1,2-Dioxygenase Reactions. [http://umbbd.msi.umn.edu/tol/tdo.html] UR - http://umbbd.msi.umn.edu/tol/tdo.html ID - ref24 ER - TY - STD TI - UM-BBD Anaerobic Metabolic Pathway for Toluene. [http://umbbd.msi.umn.edu/tol2/tol2_map.html] UR - http://umbbd.msi.umn.edu/tol2/tol2_map.html ID - ref25 ER - TY - JOUR AU - Beller, H. R. AU - Spormann, A. M. PY - 1997 DA - 1997// TI - Anaerobic activation of toluene and o-xylene by addition to fumarate in denitrifying strain T JO - J Bacteriol VL - 179 ID - Beller1997 ER - TY - JOUR AU - Boll, M. AU - Fuchs, G. PY - 1995 DA - 1995// TI - Benzoyl-coenzyme A reductase (dearomatizing), a key enzyme of anaerobic aromatic metabolism. ATP dependence of the reaction, purification and some properties of the enzyme from Thauera aromatica strain K172 JO - Eur J Biochem VL - 234 UR - https://doi.org/10.1111/j.1432-1033.1995.921_a.x DO - 10.1111/j.1432-1033.1995.921_a.x ID - Boll1995 ER - TY - STD TI - UM-BBD BTEX Metapathway Map. [http://umbbd.msi.umn.edu/BTEX/BTEX_map.html] UR - http://umbbd.msi.umn.edu/BTEX/BTEX_map.html ID - ref28 ER - TY - JOUR AU - Rosner, B. M. AU - Schink, B. PY - 1995 DA - 1995// TI - Purification and characterization of acetylene hydratase of Pelobacter acetylenicus, a tungsten iron-sulfur protein JO - J Bacteriol VL - 177 ID - Rosner1995 ER - TY - JOUR AU - Rosner, B. M. AU - Rainey, F. A. AU - Kroppenstedt, R. M. AU - Schink, B. PY - 1997 DA - 1997// TI - Acetylene degradation by new isolates of aerobic bacteria and comparison of acetylene hydratase enzymes JO - FEMS Microbiol Lett VL - 148 UR - https://doi.org/10.1111/j.1574-6968.1997.tb10285.x DO - 10.1111/j.1574-6968.1997.tb10285.x ID - Rosner1997 ER - TY - JOUR AU - Diluccio, R. C. AU - Kirwan, D. J. PY - 1984 DA - 1984// TI - Effect of dissolved oxygen on nitrogen fixation by A. vinelandii. I. Free cell cultures JO - Biotechnol Bioeng VL - 26 UR - https://doi.org/10.1002/bit.260260115 DO - 10.1002/bit.260260115 ID - Diluccio1984 ER - TY - JOUR AU - Wu, M. L. AU - Ettwig, K. F. AU - Jetten, M. S. AU - Strous, M. AU - Keltjens, J. T. AU - van Niftrik, L. PY - 2011 DA - 2011// TI - A new intra-aerobic metabolism in the nitrite-dependent anaerobic methane-oxidizing bacterium Candidatus 'Methylomirabilis oxyfera' JO - Biochem Soc Trans VL - 39 UR - https://doi.org/10.1042/BST0390243 DO - 10.1042/BST0390243 ID - Wu2011 ER - TY - JOUR AU - Chiang, Y. R. AU - Ismail, W. AU - Heintz, D. AU - Schaeffer, C. AU - Van Dorsselaer, A. AU - Fuchs, G. PY - 2008 DA - 2008// TI - Study of anoxic and oxic cholesterol metabolism by Sterolibacterium denitrificans JO - J Bacteriol VL - 190 UR - https://doi.org/10.1128/JB.01525-07 DO - 10.1128/JB.01525-07 ID - Chiang2008 ER - TY - JOUR AU - Lee, C. H. AU - Lewis, T. A. AU - Paszczynski, A. AU - Crawford, R. L. PY - 1999 DA - 1999// TI - Identification of an extracellular agent of carbon tetrachloride dehalogentation from Pseudomonas stutzeri strain KC as pyridine-2,6-bis(thiocarboxylate) JO - Biochem Biophys Res Commun VL - 261 UR - https://doi.org/10.1006/bbrc.1999.1077 DO - 10.1006/bbrc.1999.1077 ID - Lee1999 ER - TY - JOUR AU - Middeldorp, P. J. M. AU - Jaspers, M. AU - Zehnder, A. J. B. AU - Schraa, G. PY - 1996 DA - 1996// TI - Biotransformation of alpha- hexachlorocyclohexane, beta-hexachlorocyclohexane, gamma-hexachlorocyclohexane, and delta- hexachlorocyclohexane under methanogenic conditions JO - Environ Sci Technol VL - 30 UR - https://doi.org/10.1021/es950782+ DO - 10.1021/es950782+ ID - Middeldorp1996 ER - TY - JOUR AU - Warner, J. R. AU - Behlen, L. S. AU - Copley, S. D. PY - 2008 DA - 2008// TI - A trade-off between catalytic power and substrate inhibition in TCHQ dehalogenase JO - Biochemistry VL - 47 UR - https://doi.org/10.1021/bi702431n DO - 10.1021/bi702431n ID - Warner2008 ER - TY - JOUR AU - Li, S. AU - Wackett, L. P. PY - 1993 DA - 1993// TI - Reductive dehalogenation by cytochrome P450CAM: substrate binding and catalysis JO - Biochemistry VL - 32 UR - https://doi.org/10.1021/bi00087a014 DO - 10.1021/bi00087a014 ID - Li1993 ER - TY - JOUR AU - Copley, S. D. PY - 2009 DA - 2009// TI - Evolution of efficient pathways for degradation of anthropogenic chemicals JO - Nat Chem Biol VL - 5 UR - https://doi.org/10.1038/nchembio.197 DO - 10.1038/nchembio.197 ID - Copley2009 ER - TY - JOUR AU - Seffernick, J. L. AU - Wackett, L. P. PY - 2001 DA - 2001// TI - Rapid evolution of bacterial catabolic enzymes: a case study with atrazine chlorohydrolase JO - Biochemistry VL - 40 UR - https://doi.org/10.1021/bi011293r DO - 10.1021/bi011293r ID - Seffernick2001 ER - TY - JOUR AU - Aharoni, A. AU - Gaidukov, L. AU - Khersonsky, O. AU - McQ Gould, S. AU - Roodveldt, C. AU - Tawfik, D. S. PY - 2005 DA - 2005// TI - The 'evolvability' of promiscuous protein functions JO - Nat Genet VL - 37 ID - Aharoni2005 ER - TY - JOUR AU - Krutz, L. J. AU - Shaner, D. L. AU - Weaver, M. A. AU - Webb, R. M. AU - Zablotowicz, R. M. AU - Reddy, K. N. AU - Huang, Y. AU - Thomson, S. J. PY - 2010 DA - 2010// TI - Agronomic and environmental implications of enhanced s-triazine degradation JO - Pest Manag Sci VL - 66 UR - https://doi.org/10.1002/ps.1909 DO - 10.1002/ps.1909 ID - Krutz2010 ER - TY - STD TI - UM-BBD Atrazine Pathway. [http://umbbd.msi.umn.edu/atr/atr_map.html] UR - http://umbbd.msi.umn.edu/atr/atr_map.html ID - ref42 ER - TY - JOUR AU - DeSouza, M. L. AU - Sadowsky, M. J. AU - Seffernick, J. AU - Martinez, B. AU - Wackett, L. P. PY - 1998 DA - 1998// TI - The atzABC genes encoding atrazine catabolism are widespread and highly conserved JO - J Bacteriol VL - 180 ID - DeSouza1998 ER - TY - JOUR AU - Martinez, B. AU - Tomkins, J. AU - Wackett, L. P. AU - Wing, R. AU - Sadowsky, M. J. PY - 2001 DA - 2001// TI - Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. ADP JO - J Bacteriol VL - 183 UR - https://doi.org/10.1128/JB.183.19.5684-5697.2001 DO - 10.1128/JB.183.19.5684-5697.2001 ID - Martinez2001 ER - TY - JOUR AU - Raillard, S. -. A. AU - Krebber, A. AU - Chen, Y. AU - Ness, J. E. AU - Bermudez, E. AU - Trinidad, R. AU - Fullem, R. AU - Davis, C. AU - Welch, M. AU - Seffernick, J. AU - Wackett, L. P. AU - Stemmer, W. P. C. AU - Minshull, J. PY - 2001 DA - 2001// TI - Novel enzyme activities and functional plasticity revealed by recombining homologous enzymes JO - Chem Biol VL - 8 UR - https://doi.org/10.1016/S1074-5521(01)00061-8 DO - 10.1016/S1074-5521(01)00061-8 ID - Raillard2001 ER - TY - JOUR AU - Blum, L. C. AU - Reymond, J. L. PY - 2009 DA - 2009// TI - 970 million druglike small molecules for virtual screening in the chemical universe database GDB-13 JO - J Am Chem Soc VL - 131 UR - https://doi.org/10.1021/ja902302h DO - 10.1021/ja902302h ID - Blum2009 ER - TY - STD TI - UM-BBD Functional Groups. [http://umbbd.msi.umn.edu/search/FuncGrps.html] UR - http://umbbd.msi.umn.edu/search/FuncGrps.html ID - ref47 ER - TY - STD TI - UM-BBD Pathway Prediction System. [http://umbbd.msi.umn.edu/predict/] UR - http://umbbd.msi.umn.edu/predict/ ID - ref48 ER - TY - STD TI - PathPred. [http://www.genome.jp/tools/pathpred/] UR - http://www.genome.jp/tools/pathpred/ ID - ref49 ER - TY - JOUR AU - Ellis, L. B. AU - Gao, J. AU - Fenner, K. AU - Wackett, L. P. PY - 2008 DA - 2008// TI - The University of Minnesota pathway prediction system: predicting metabolic logic JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn315 DO - 10.1093/nar/gkn315 ID - Ellis2008 ER - TY - JOUR AU - Kern, S. AU - Fenner, K. AU - Singer, H. P. AU - Schwarzenbach, R. P. AU - Hollender, J. PY - 2009 DA - 2009// TI - Identification of transformation products of organic contaminants in natural waters by computer-aided prediction and high-resolution mass spectrometry JO - Environ Sci Technol VL - 43 UR - https://doi.org/10.1021/es901979h DO - 10.1021/es901979h ID - Kern2009 ER - TY - JOUR AU - Helbling, D. E. AU - Hollender, J. AU - Kohler, H. P. AU - Singer, H. AU - Fenner, K. PY - 2010 DA - 2010// TI - High-throughput identification of microbial transformation products of organic micropollutants JO - Environ Sci Technol VL - 44 UR - https://doi.org/10.1021/es100970m DO - 10.1021/es100970m ID - Helbling2010 ER - TY - JOUR AU - Prasse, C. AU - Wagner, M. AU - Schulz, R. AU - Ternes, T. A. PY - 2011 DA - 2011// TI - Biotransformation of the antiviral drugs acyclovir and penciclovir in activated sludge treatment JO - Environ Sci Technol VL - 45 UR - https://doi.org/10.1021/es103732y DO - 10.1021/es103732y ID - Prasse2011 ER - TY - JOUR AU - Wang, Y. AU - Xiao, J. AU - Suzek, T. O. AU - Zhang, J. AU - Wang, J. AU - Bryant, S. H. PY - 2009 DA - 2009// TI - PubChem: a public information system for analyzing bioactivities of small molecules JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkp456 DO - 10.1093/nar/gkp456 ID - Wang2009 ER - TY - JOUR AU - Moriya, Y. AU - Shigemizu, D. AU - Hattori, M. AU - Tokimatsu, T. AU - Kotera, M. AU - Goto, S. AU - Kanehisa, M. PY - 2010 DA - 2010// TI - PathPred: an enzyme-catalyzed metabolic pathway prediction server JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq318 DO - 10.1093/nar/gkq318 ID - Moriya2010 ER - TY - JOUR AU - Kanehisa, M. AU - Goto, S. AU - Furumichi, M. AU - Tanabe, M. AU - Hirakawa, M. PY - 2010 DA - 2010// TI - KEGG for representation and analysis of molecular networks involving diseases and drugs JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkp896 DO - 10.1093/nar/gkp896 ID - Kanehisa2010 ER -