Microbial Informatics and Experimentation

Table 1 Network statistics

From: The Regulatory Network of Pseudomonas aeruginosa

	Whole network	Sub network
Number of TFs	76	76
Auto-regulations	29 (38.15%)	29
Positive auto-regulations	16 (55.17%)	16
Negative auto-regulations	13 (44.82%)	13
Regulatory arrows	1020	122
Positive arrows	779 (76.37%)	70 (57.37%)
Negative arrows	218 (21.35%)	52 (42.62%)
Dual arrows	11 (1.07%)	0
Unknown arrows	12 (1.17%)	0
Average path length	4.08	2.13
Maximum out degree	95 (lasR)	14 (fur)
Maximum in degree	8 (rhlI)	7 (rhlR)

The number and sign of interactions and other topological measures for the whole network and the sub-network, which includes only the regulatory machinery ofP. aeruginosa, are shown (Figure 4).

Back to article page