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Table 3 M. jannaschii genes located in the region with 11 bp periodicity.

From: PerPlot & PerScan: tools for analysis of DNA curvature-related periodicity in genomic nucleotide sequences

Locus tag

Start

End

Strand

Product

Species with top three

BLAST hitsa

MJ0782

703765

705786

-

transcription initiation factor IIB

Methanobacterium sp.

Methanobrevibacter ruminantium

Methanothermobacter thermoautotrophicus

MJ0782.1

705793

706038

-

H/ACA RNA-protein complex component Gar1

Methanopyrus kandleri

Halorubrum lacusprofundi

Methanothermobacter thermoautotrophicus

MJ0783

706179

706739

+

hypothetical protein

Acidianus hospitalis

Thermococcus sibiricus

*Clostridium stricklandii

MJ0784

707015

708091

+

H(2)-dependent methylenetetrahydro-methanopterin dehydrogenase

Methanothermus fervidus

Methanoplanus petrolearius

Methanothermobacter thermoautotrophicus

MJ0785

708313

709440

+

biotin synthase

Methanothermus fervidus

Methanothermobacter thermoautotrophicus

Methanothermobacter marburgensis

MJ0785.1

709430

709999

+

hypothetical protein

+Karlodinium micrum chloroplast

*Saccharophagus degradans

MJ0786

710062

710622

+

hypothetical protein

Methanohalobium evestigatum

Methanohalophilus mahii

Methanococcoides burtonii

MJ0787

710772

712286

+

hypothetical protein

Methanothermus fervidus

Methanobrevibacter smithii

Methanothermobacter marburgensis

MJ0788

712302

712541

+

hypothetical protein

Methanosarcina mazei

Methanoplanus petrolearius

+ Neosartorya fischeri

MJ0789

712624

712974

+

hypothetical protein

Methanohalophilus mahii

Methanosarcina mazei

Methanosarcina barkeri

MJ0790

713009

713698

+

NADH dehydrogenase subunit 1

Methanothermus fervidus

Methanothermobacter thermoautotrophicus

Methanothermobacter marburgensis

MJ0791

713720

715174

-

argininosuccinate lyase

Methanothermus fervidus

Methanothermobacter marburgensis

Methanothermobacter thermoautotrophicus

  1. a Excluding the order Methanococcales. Only one hit per species is reported (excluding hits to multiple strains). Hits to eubacterial proteins are labeled by an asterisk and hits to eukaryotes or organelles by a "+". The blastp program implementation at the NCBI web site http://blast.ncbi.nlm.nih.gov with default parameters was used to find the top hits. Fewer than three hits are shown when less than three significant hits were detected.