Table 5 PSI-MI assignments to annotated experimental techniques.
From: Stringent response of Escherichia coli: revisiting the bibliome using literature mining
Techniques | Statistics over the corpus | Frequency per Decade | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
PSI-MI Class | PSI-MI id | PSI-MI name | Freq | Mean | Std | VMR | 1970 | 1980 | 1990 | 2000 |
MI:0659 experimental feature detection | MI:0659 | experimental feature detection* | 55% | 2.44 | 2.76 | 2 | 64% | 65% | 67% | 67% |
| Â | MI:0833 | autoradiography | 25% | 1.65 | 1.4 | 1 | 29% | 35% | 22% | 22% |
| Â | MI:0113 | western blot | 21% | 4.95 | 3.38 | 2.25 | - | 13% | 18% | 44% |
| Â | MI:0074 | mutation analysis | 20% | 3.34 | 3.24 | 3 | 14% | 20% | 27% | 32% |
| Â | MI:0114 | x-ray crystallography | 4% | 1.63 | 1.46 | 1 | - | - | 2% | 8% |
| Â | MI:0811 | insertion analysis | 4% | 1.14 | 0.38 | 0 | - | - | 7% | 4% |
MI:0045 experimental interaction detection | MI:0091 | chromatography technology | 50% | 4.23 | 4.14 | 4 | 100% | 85% | 55% | 64% |
| Â | MI:0254 | genetic interference | 42% | 2.68 | 2.35 | 2 | - | 28% | 69% | 64% |
| Â | MI:0807 | comigration in gel electrophoresis | 37% | 2.51 | 2.13 | 2 | 21% | 48% | 51% | 49% |
| Â | MI:0045 | experimental interaction detection* | 36% | 3.1 | 3.12 | 3 | 14% | 45% | 47% | 41% |
| Â | MI:0808 | comigration in sds page | 27% | 2.02 | 1.61 | 0.5 | 7% | 23% | 33% | 29% |
| Â | MI:0099 | scintillation proximity assay | 24% | 1.94 | 1.65 | 1 | 64% | 35% | 20% | 15% |
| Â | MI:0051 | fluorescence technology | 16% | 1.84 | 1.8 | 1 | 7% | 20% | 5% | 22% |
| Â | MI:0071 | molecular sieving | 15% | 2.25 | 3.19 | 4.5 | 29% | 13% | 15% | 13% |
| Â | MI:0217 | phosphorylation reaction | 13% | 2.72 | 3.74 | 4.5 | 7% | 8% | 16% | 14% |
| Â | MI:0415 | enzymatic study | 12% | 1.96 | 2.11 | 4 | 7% | 8% | 11% | 19% |
| Â | MI:0008 | array technology | 10% | 8.47 | 7.47 | 6.13 | - | - | - | 22% |
| Â | MI:0928 | filter trap assay | 9% | 2.24 | 2.47 | 2 | 36% | 13% | 4% | 6% |
| Â | MI:0004 | affinity chromatography technology | 8% | 2.33 | 2.44 | 2 | - | 5% | 5% | 13% |
| Â | MI:0428 | imaging technique | 7% | 1.57 | 1.41 | 1 | - | 8% | 4% | 11% |
| Â | MI:0047 | far western blotting | 6% | 1.5 | 0.82 | 0 | - | 3% | 7% | 8% |
| Â | MI:0435 | protease assay | 6% | 3.92 | 4.01 | 5.33 | - | 5% | 5% | 8% |
| Â | MI:0017 | classical fluorescence spectroscopy | 6% | 1.08 | 0.29 | 0 | - | - | 5% | 11% |
| Â | MI:0089 | protein array | 6% | 1.64 | 1.62 | 1 | - | 3% | 2% | 11% |
| Â | MI:0029 | cosedimentation through density gradient | 5% | 5.22 | 3.94 | 1.8 | 43% | 10% | - | 2% |
| Â | MI:0040 | electron microscopy | 4% | 2.57 | 1.31 | 0.5 | - | 10% | - | 4% |
| Â | MI:0676 | tandem affinity purification | 3% | 3.8 | 5.18 | 8.33 | - | - | - | 7% |
| Â | MI:0054 | fluorescence-activated cell sorting | 3% | 5.8 | 4.6 | 3.2 | - | - | 4% | 4% |
| Â | MI:0413 | electrophoretic mobility shift assay | 3% | 1.6 | 0.77 | 0 | - | - | 5% | 2% |
| Â | MI:0012 | bioluminescence resonance energy transfer | 2% | 6.25 | 5.68 | 4.17 | - | - | 4% | 2% |
| Â | MI:0018 | two hybrid | 2% | 2 | 1.41 | 0.5 | - | - | - | 7% |
| Â | MI:0053 | fluorescence polarization spectroscopy | 2% | 5 | 2.94 | 0.8 | - | 3% | - | 2% |
| Â | MI:0397 | two hybrid array | 2% | 2 | 1.41 | 0.5 | - | - | 2% | 2% |
| Â | MI:0227 | reverse phase chromatography | 2% | 3.25 | 2.87 | 1.33 | - | - | 5% | 1% |
| Â | MI:0226 | ion exchange chromatography | 1% | 1 | 0 | 0 | - | - | - | 1% |
| Â | MI:0031 | protein cross-linking with a bifunctional reagent | 1% | 7 | 4 | 2.29 | - | 3% | - | 1% |
| Â | MI:0052 | fluorescence correlation spectroscopy | 1% | 1 | 0 | 0 | - | - | - | 1% |
| Â | MI:0416 | fluorescence microscopy | 1% | 2.5 | 0.71 | 0 | - | - | - | 2% |
| Â | MI:0016 | circular dichroism | 1% | 1.5 | 0.71 | 0 | - | - | - | 2% |
| Â | MI:0225 | chromatin immunoprecipitation array | 1% | 1 | 0 | 0 | - | - | - | 1% |
| Â | MI:0872 | atomic force microscopy | 1% | 1 | 0 | 0 | - | - | - | 1% |
| Â | MI:0049 | filter binding | 1% | 1 | 0 | 0 | - | 3% | 2% | - |
| Â | MI:0426 | light microscopy | 1% | 1 | 0 | 0 | - | - | - | 2% |
MI:0661 experimental participant identification | MI:0088 | primer specific pcr | 40% | 10.38 | 15.87 | 22.5 | - | 8% | 29% | 95% |
| Â | MI:0080 | partial dna sequence identification by hybridization | 27% | 3.75 | 3.47 | 3 | 14% | 30% | 29% | 26% |
| Â | MI:0078 | nucleotide sequence identification | 20% | 1.77 | 1.26 | 1 | - | 15% | 25% | 22% |
| Â | MI:0103 | southern blot | 14% | 3.04 | 2.05 | 1.33 | - | 8% | 15% | 19% |
| Â | MI:0929 | nothern blot | 8% | 5.56 | 4.8 | 3.2 | - | 3% | 11% | 11% |
| Â | MI:0421 | identification by antibody | 6% | 1.82 | 1.51 | 1 | - | 8% | 5% | 6% |
| Â | MI:0427 | identification by mass spectrometry | 5% | 1.67 | 0.94 | 0 | - | - | 4% | 8% |
| Â | MI:0082 | peptide massfingerprinting | 2% | 1.5 | 0.71 | 0 | - | - | - | 5% |
| Â | MI:0093 | protein sequence identification | 1% | 1 | 0 | 0 | - | - | 2% | Â |
| Â | MI:0411 | enzyme linked immunosorbent assay | 1% | 4 | 2 | 1 | - | - | 2% | 1% |
MI:0346 experimental preparation | MI:0714 | nucleic acid transduction | 26% | 2.22 | 2.82 | 2 | 14% | 15% | 31% | 29% |
| Â | MI:0715 | nucleic acid conjugation | 6% | 1.73 | 1.41 | 1 | 7% | 3% | 5% | 7% |
| Â | MI:0308 | electroporation | 5% | 1.89 | 1.56 | 1 | - | - | 2% | 9% |
| Â | MI:0343 | cdna library | 3% | 1 | 0 | 0 | - | - | - | 6% |
MI:0190 interaction type | MI:0194 | cleavage reaction | 1% | 1 | 0 | 0 | - | 3% | - | - |
MI:0116 feature type | MI:0373 | dye label | 5% | 1.2 | 0.45 | 0 | 7% | 8% | 5% | 4% |